WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56B6.2b.1 Sequence Name  F56B6.2b.1
Length (nt)  2820   Chromosome Location  X: 3545406-3557596
Chromosome . Primary Identifier  X Chromosome Location . Start  3545406
Chromosome Location . End  3557596 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56B6.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004350 rgs-7 F56B6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B6.2b F56B6.2b 2349   X: 3545441-3545487

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2b.1 3545406 3557596 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228651   82   X: 3545406-3545487 Caenorhabditis elegans
Exon228653   268   X: 3545556-3545823 Caenorhabditis elegans
Exon228660   120   X: 3546497-3546616 Caenorhabditis elegans
Exon228663   587   X: 3546665-3547251 Caenorhabditis elegans
Exon228668   72   X: 3547447-3547518 Caenorhabditis elegans
Exon228674   190   X: 3547569-3547758 Caenorhabditis elegans
Exon228682   90   X: 3547830-3547919 Caenorhabditis elegans
Exon228686   211   X: 3550061-3550271 Caenorhabditis elegans
Exon228693   128   X: 3552547-3552674 Caenorhabditis elegans
Exon228700   113   X: 3552814-3552926 Caenorhabditis elegans
Exon228709   134   X: 3556440-3556573 Caenorhabditis elegans
Exon228718   170   X: 3556632-3556801 Caenorhabditis elegans
Exon228727   125   X: 3556880-3557004 Caenorhabditis elegans
Exon228737   530   X: 3557067-3557596 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2b.1 3545406 3557596 1

1 Sequence

Length
2820

1 Sequence Ontology Term

Identifier Name Description
transcript