WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R11G1.6a.1 Sequence Name  R11G1.6a.1
Length (nt)  3079   Chromosome Location  X: 3639166-3644896
Chromosome . Primary Identifier  X Chromosome Location . Start  3639166
Chromosome Location . End  3644896 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11G1.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020012 tmem-24 R11G1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R11G1.6a R11G1.6a 2700   X: 3639504-3639579

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R11G1.6a.1 3639166 3644896 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228885   414   X: 3639166-3639579 Caenorhabditis elegans
Exon228889   82   X: 3639639-3639720 Caenorhabditis elegans
Exon228893   71   X: 3639766-3639836 Caenorhabditis elegans
Exon228897   117   X: 3639932-3640048 Caenorhabditis elegans
Exon228901   213   X: 3640424-3640636 Caenorhabditis elegans
Exon228905   442   X: 3640679-3641120 Caenorhabditis elegans
Exon228909   338   X: 3641169-3641506 Caenorhabditis elegans
Exon228913   188   X: 3641551-3641738 Caenorhabditis elegans
Exon228917   150   X: 3641799-3641948 Caenorhabditis elegans
Exon228921   252   X: 3642569-3642820 Caenorhabditis elegans
Exon228925   120   X: 3642864-3642983 Caenorhabditis elegans
Exon228929   105   X: 3643035-3643139 Caenorhabditis elegans
Exon228933   154   X: 3643192-3643345 Caenorhabditis elegans
Exon228937   145   X: 3644362-3644506 Caenorhabditis elegans
Exon228942   288   X: 3644609-3644896 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R11G1.6a.1 3639166 3644896 -1

1 Sequence

Length
3079

1 Sequence Ontology Term

Identifier Name Description
transcript