WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00003359 Gene Name  mir-266
Sequence Name  ? T14G12.7 Brief Description  mir-266 encodes a microRNA, a small non-protein coding RNA; computational methods that compare RNA sequence indicate that mir-266 belongs to a cluster that includes mir-269, human mir-31 and C. elegans mir-72; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-266 is unknown.
Organism  Caenorhabditis elegans Biotype  SO:0001265
Genetic Position  X :-9.47241± Length (nt)  ? 94
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00003359

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T14G12.7a T14G12.7a 20   X: 3755172-3755191
 

Other

0 CDSs

0 RNAi Result

19 Allele

Public Name
gk963725
gk964260
WBVar02123429
WBVar02122282
WBVar02123951
WBVar02123640
WBVar02122878
WBVar02123330
gk962942
WBVar02121673
WBVar02123151
WBVar02121816
WBVar02123864
WBVar02123483
WBVar02121501
WBVar02122337
WBVar02122977
WBVar02123554
WBVar02122879

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00003359 3755150 3755243 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_3755244..3756890   1647 X: 3755244-3756890 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Fasting for 48 hours, from 3 days post L4 to 5 days post L4. MicroRNAs that showed significantly increased expression after 48 hours of fasting p < 0.0002, Fishers exact test. WBPaper00051247:fasting_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr8439 Very weak expression detected in dnc from L1 to adulthood.  
    Expr10972    

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00003359 3755150 3755243 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
94

1 Sequence Ontology Term