WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47B7.2a.1 Sequence Name  F47B7.2a.1
Length (nt)  2549   Chromosome Location  X: 3772763-3777552
Chromosome . Primary Identifier  X Chromosome Location . Start  3772763
Chromosome Location . End  3777552 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47B7.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018533 F47B7.2 F47B7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47B7.2a F47B7.2a 1872   X: 3772777-3772834

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47B7.2a.1 3772763 3777552 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229282   72   X: 3772763-3772834 Caenorhabditis elegans
Exon229286   137   X: 3773694-3773830 Caenorhabditis elegans
Exon229289   83   X: 3773880-3773962 Caenorhabditis elegans
Exon229292   112   X: 3774199-3774310 Caenorhabditis elegans
Exon229295   158   X: 3774365-3774522 Caenorhabditis elegans
Exon229298   343   X: 3774576-3774918 Caenorhabditis elegans
Exon229302   168   X: 3775169-3775336 Caenorhabditis elegans
Exon229305   114   X: 3775392-3775505 Caenorhabditis elegans
Exon229308   142   X: 3775557-3775698 Caenorhabditis elegans
Exon229311   350   X: 3776065-3776414 Caenorhabditis elegans
Exon229316   870   X: 3776683-3777552 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47B7.2a.1 3772763 3777552 1

1 Sequence

Length
2549

1 Sequence Ontology Term

Identifier Name Description
transcript