WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F35A5.8a.2 Sequence Name  F35A5.8a.2
Length (nt)  1307   Chromosome Location  X: 3800033-3802771
Chromosome . Primary Identifier  X Chromosome Location . Start  3800033
Chromosome Location . End  3802771 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F35A5.8a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001335 F35A5.8 F35A5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F35A5.8a F35A5.8a 1101   X: 3800220-3800324

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F35A5.8a.2 3800033 3802771 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229386   292   X: 3800033-3800324 Caenorhabditis elegans
Exon229390   102   X: 3800394-3800495 Caenorhabditis elegans
Exon229393   97   X: 3800595-3800691 Caenorhabditis elegans
Exon229397   101   X: 3801365-3801465 Caenorhabditis elegans
Exon229401   90   X: 3801518-3801607 Caenorhabditis elegans
Exon229405   39   X: 3801748-3801786 Caenorhabditis elegans
Exon229408   93   X: 3801865-3801957 Caenorhabditis elegans
Exon229412   134   X: 3802100-3802233 Caenorhabditis elegans
Exon229416   135   X: 3802287-3802421 Caenorhabditis elegans
Exon229420   142   X: 3802489-3802630 Caenorhabditis elegans
Exon229424   82   X: 3802690-3802771 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F35A5.8a.2 3800033 3802771 -1

1 Sequence

Length
1307

1 Sequence Ontology Term

Identifier Name Description
transcript