WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F35A5.8a.1 Sequence Name  F35A5.8a.1
Length (nt)  1421   Chromosome Location  X: 3800045-3803464
Chromosome . Primary Identifier  X Chromosome Location . Start  3800045
Chromosome Location . End  3803464 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F35A5.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001335 F35A5.8 F35A5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F35A5.8a F35A5.8a 1101   X: 3800220-3800324

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F35A5.8a.1 3800045 3803464 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229388   280   X: 3800045-3800324 Caenorhabditis elegans
Exon229389   102   X: 3800394-3800495 Caenorhabditis elegans
Exon229392   97   X: 3800595-3800691 Caenorhabditis elegans
Exon229396   101   X: 3801365-3801465 Caenorhabditis elegans
Exon229400   90   X: 3801518-3801607 Caenorhabditis elegans
Exon229404   39   X: 3801748-3801786 Caenorhabditis elegans
Exon229407   93   X: 3801865-3801957 Caenorhabditis elegans
Exon229411   134   X: 3802100-3802233 Caenorhabditis elegans
Exon229415   135   X: 3802287-3802421 Caenorhabditis elegans
Exon229419   142   X: 3802489-3802630 Caenorhabditis elegans
Exon229423   80   X: 3802690-3802769 Caenorhabditis elegans
Exon229428   128   X: 3803337-3803464 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F35A5.8a.1 3800045 3803464 -1

1 Sequence

Length
1421

1 Sequence Ontology Term

Identifier Name Description
transcript