WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16B8.1.1 Sequence Name  C16B8.1.1
Length (nt)  1883   Chromosome Location  X: 3958552-3961907
Chromosome . Primary Identifier  X Chromosome Location . Start  3958552
Chromosome Location . End  3961907 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16B8.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003007 lin-18 C16B8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16B8.1 C16B8.1 1752   X: 3958560-3958659

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16B8.1.1 3958552 3961907 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229721   108   X: 3958552-3958659 Caenorhabditis elegans
Exon229722   122   X: 3958841-3958962 Caenorhabditis elegans
Exon229723   94   X: 3959018-3959111 Caenorhabditis elegans
Exon229724   156   X: 3959163-3959318 Caenorhabditis elegans
Exon229725   160   X: 3960151-3960310 Caenorhabditis elegans
Exon229726   71   X: 3960358-3960428 Caenorhabditis elegans
Exon229727   89   X: 3960474-3960562 Caenorhabditis elegans
Exon229728   76   X: 3960630-3960705 Caenorhabditis elegans
Exon229729   348   X: 3960754-3961101 Caenorhabditis elegans
Exon229730   287   X: 3961149-3961435 Caenorhabditis elegans
Exon229731   137   X: 3961486-3961622 Caenorhabditis elegans
Exon229732   235   X: 3961673-3961907 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16B8.1.1 3958552 3961907 1

1 Sequence

Length
1883

1 Sequence Ontology Term

Identifier Name Description
transcript