WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06F4.2a.1 Sequence Name  T06F4.2a.1
Length (nt)  3190   Chromosome Location  X: 4095244-4100573
Chromosome . Primary Identifier  X Chromosome Location . Start  4095244
Chromosome Location . End  4100573 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06F4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000531 clh-4 T06F4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06F4.2a T06F4.2a 3153   X: 4095244-4095582

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T06F4.2a.1 4095244 4100573 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon229882   339   X: 4095244-4095582 Caenorhabditis elegans
Exon229884   192   X: 4095626-4095817 Caenorhabditis elegans
Exon229886   101   X: 4096225-4096325 Caenorhabditis elegans
Exon229888   66   X: 4096374-4096439 Caenorhabditis elegans
Exon229890   170   X: 4096494-4096663 Caenorhabditis elegans
Exon229892   125   X: 4096714-4096838 Caenorhabditis elegans
Exon229894   155   X: 4096886-4097040 Caenorhabditis elegans
Exon229896   131   X: 4097091-4097221 Caenorhabditis elegans
Exon229898   116   X: 4097268-4097383 Caenorhabditis elegans
Exon229900   159   X: 4097427-4097585 Caenorhabditis elegans
Exon229902   99   X: 4098009-4098107 Caenorhabditis elegans
Exon229904   153   X: 4098166-4098318 Caenorhabditis elegans
Exon229906   85   X: 4098363-4098447 Caenorhabditis elegans
Exon229908   184   X: 4098494-4098677 Caenorhabditis elegans
Exon229910   420   X: 4098977-4099396 Caenorhabditis elegans
Exon229912   273   X: 4099683-4099955 Caenorhabditis elegans
Exon229914   136   X: 4100008-4100143 Caenorhabditis elegans
Exon229916   92   X: 4100192-4100283 Caenorhabditis elegans
Exon229919   194   X: 4100380-4100573 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T06F4.2a.1 4095244 4100573 -1

1 Sequence

Length
3190

1 Sequence Ontology Term

Identifier Name Description
transcript