WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F20B6.3.1 Sequence Name  F20B6.3.1
Length (nt)  4498   Chromosome Location  X: 4177989-4186756
Chromosome . Primary Identifier  X Chromosome Location . Start  4177989
Chromosome Location . End  4186756 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F20B6.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003412 mrp-6 F20B6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F20B6.3 F20B6.3 4248   X: 4178229-4178405

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F20B6.3.1 4177989 4186756 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon230036   417   X: 4177989-4178405 Caenorhabditis elegans
Exon230037   276   X: 4178455-4178730 Caenorhabditis elegans
Exon230038   249   X: 4179115-4179363 Caenorhabditis elegans
Exon230039   204   X: 4179409-4179612 Caenorhabditis elegans
Exon230040   104   X: 4180015-4180118 Caenorhabditis elegans
Exon230041   121   X: 4180193-4180313 Caenorhabditis elegans
Exon230042   107   X: 4180743-4180849 Caenorhabditis elegans
Exon230043   151   X: 4180901-4181051 Caenorhabditis elegans
Exon230044   80   X: 4181107-4181186 Caenorhabditis elegans
Exon230045   272   X: 4181239-4181510 Caenorhabditis elegans
Exon230046   507   X: 4181557-4182063 Caenorhabditis elegans
Exon230047   854   X: 4183115-4183968 Caenorhabditis elegans
Exon230048   151   X: 4184023-4184173 Caenorhabditis elegans
Exon230049   126   X: 4184861-4184986 Caenorhabditis elegans
Exon230050   376   X: 4185032-4185407 Caenorhabditis elegans
Exon230051   203   X: 4185468-4185670 Caenorhabditis elegans
Exon230052   215   X: 4186215-4186429 Caenorhabditis elegans
Exon230053   85   X: 4186672-4186756 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F20B6.3.1 4177989 4186756 -1

1 Sequence

Length
4498

1 Sequence Ontology Term

Identifier Name Description
transcript