WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00303101 Gene Name  F20B6.10
Sequence Name  ? F20B6.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by sir-2.1 based on microarray studies. Biotype  SO:0001217
Genetic Position  X:± Length (nt)  ? 110
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00303101

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F20B6.10b.1 F20B6.10b.1 42   X: 4217087-4217128
Transcript:F20B6.10a.1 F20B6.10a.1 72   X: 4217125-4217196
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F20B6.10a F20B6.10a 72   X: 4217125-4217196
CDS:F20B6.10b F20B6.10b 42   X: 4217087-4217128

2 RNAi Result

WormBase ID
WBRNAi00045084
WBRNAi00019473

6 Allele

Public Name
gk963725
gk964260
gk848562
gk788691
gk277653
gk277652

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00303101 4217087 4217196 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Germline-enriched and sex-biased expression profile cluster B. hierarchical clustering [cgc6390]:Cluster_B
  Genes that showed significantly changed expression during aging (ANOVA, p < 0.0001) ANOVA, p < 0.0001. WBPaper00032062:age_regulated_genes
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_20

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00303101 4217087 4217196 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
110

1 Sequence Ontology Term