WormMine: Gene WBGene00199948

• WormBase Gene ID: WBGene00199948
• Gene Name: W01H2.8
• Sequence Name: W01H2.8
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AFD and neurons based on RNA-seq studies. Is affected by daf-2 based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 76

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00199948

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:W01H2.8	W01H2.8	76	X: 4223252-4223327

Other

0 CDSs

0 RNAi Result

2 Allele

• gk963725
• gk964260

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00199948
• Start: 4223252
• End: 4223327
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_4222466..4223251
• Length (nt): 786
• Chromosome Location: X: 4222466-4223251
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage.	Transcripts that showed significantly increased expression in AFD neurons comparing to in whole animals.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00065158:AFD_enriched
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
Hypoxia: 7% oxygen.	Transcripts that showed significantly decreased expression at animals treated with 7% oxygen, comparing to animals grown at 21% oxygen.	Fold change > 2, p-value < 0.05.	WBPaper00060661:hypoxia_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00199948
• Start: 4223252
• End: 4223327
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 76

1 Sequence Ontology Term