WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52B9.6.1 Sequence Name  C52B9.6.1
Length (nt)  1771   Chromosome Location  X: 4274719-4279344
Chromosome . Primary Identifier  X Chromosome Location . Start  4274719
Chromosome Location . End  4279344 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52B9.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006680 twk-28 C52B9.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52B9.6 C52B9.6 1572   X: 4274786-4274971

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52B9.6.1 4274719 4279344 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon230274   253   X: 4274719-4274971 Caenorhabditis elegans
Exon230275   143   X: 4275019-4275161 Caenorhabditis elegans
Exon230276   80   X: 4275209-4275288 Caenorhabditis elegans
Exon230277   96   X: 4275344-4275439 Caenorhabditis elegans
Exon230278   140   X: 4275886-4276025 Caenorhabditis elegans
Exon230279   216   X: 4276068-4276283 Caenorhabditis elegans
Exon230281   164   X: 4276742-4276905 Caenorhabditis elegans
Exon230282   202   X: 4277486-4277687 Caenorhabditis elegans
Exon230283   75   X: 4277733-4277807 Caenorhabditis elegans
Exon230284   108   X: 4278408-4278515 Caenorhabditis elegans
Exon230285   126   X: 4279002-4279127 Caenorhabditis elegans
Exon230286   168   X: 4279177-4279344 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52B9.6.1 4274719 4279344 -1

1 Sequence

Length
1771

1 Sequence Ontology Term

Identifier Name Description
transcript