WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52B9.7a.1 Sequence Name  C52B9.7a.1
Length (nt)  1274   Chromosome Location  X: 4291475-4294352
Chromosome . Primary Identifier  X Chromosome Location . Start  4291475
Chromosome Location . End  4294352 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52B9.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003907 paf-2 C52B9.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52B9.7a C52B9.7a 1167   X: 4291573-4291728

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52B9.7a.1 4291475 4294352 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon230355   254   X: 4291475-4291728 Caenorhabditis elegans
Exon230356   246   X: 4292222-4292467 Caenorhabditis elegans
Exon230358   210   X: 4292517-4292726 Caenorhabditis elegans
Exon230361   124   X: 4293287-4293410 Caenorhabditis elegans
Exon230363   156   X: 4293459-4293614 Caenorhabditis elegans
Exon230366   128   X: 4293671-4293798 Caenorhabditis elegans
Exon230371   156   X: 4294197-4294352 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52B9.7a.1 4291475 4294352 -1

1 Sequence

Length
1274

1 Sequence Ontology Term

Identifier Name Description
transcript