WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F15A8.5a.1 Sequence Name  F15A8.5a.1
Length (nt)  2366   Chromosome Location  X: 4411307-4418851
Chromosome . Primary Identifier  X Chromosome Location . Start  4411307
Chromosome Location . End  4418851 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F15A8.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001052 dop-1 F15A8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F15A8.5a F15A8.5a 1383   X: 4411591-4411738

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F15A8.5a.1 4411307 4418851 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon230642   432   X: 4411307-4411738 Caenorhabditis elegans
Exon230644   146   X: 4411782-4411927 Caenorhabditis elegans
Exon230651   112   X: 4412170-4412281 Caenorhabditis elegans
Exon230658   128   X: 4412329-4412456 Caenorhabditis elegans
Exon230665   174   X: 4413279-4413452 Caenorhabditis elegans
Exon230668   214   X: 4413918-4414131 Caenorhabditis elegans
Exon230675   114   X: 4414182-4414295 Caenorhabditis elegans
Exon230682   173   X: 4414344-4414516 Caenorhabditis elegans
Exon230690   181   X: 4415897-4416077 Caenorhabditis elegans
Exon230700   692   X: 4418160-4418851 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F15A8.5a.1 4411307 4418851 -1

1 Sequence

Length
2366

1 Sequence Ontology Term

Identifier Name Description
transcript