WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F02E8.5.1 Sequence Name  F02E8.5.1
Length (nt)  1859   Chromosome Location  X: 4459603-4462465
Chromosome . Primary Identifier  X Chromosome Location . Start  4459603
Chromosome Location . End  4462465 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F02E8.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017178 atg-16.1 F02E8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F02E8.5 F02E8.5 1584   X: 4459869-4459956

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F02E8.5.1 4459603 4462465 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon230763   354   X: 4459603-4459956 Caenorhabditis elegans
Exon230764   150   X: 4460002-4460151 Caenorhabditis elegans
Exon230765   268   X: 4460199-4460466 Caenorhabditis elegans
Exon230766   118   X: 4460528-4460645 Caenorhabditis elegans
Exon230767   127   X: 4460944-4461070 Caenorhabditis elegans
Exon230768   122   X: 4461123-4461244 Caenorhabditis elegans
Exon230769   91   X: 4461293-4461383 Caenorhabditis elegans
Exon230770   72   X: 4461626-4461697 Caenorhabditis elegans
Exon230771   131   X: 4461741-4461871 Caenorhabditis elegans
Exon230772   121   X: 4461920-4462040 Caenorhabditis elegans
Exon230773   208   X: 4462100-4462307 Caenorhabditis elegans
Exon230774   97   X: 4462369-4462465 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F02E8.5.1 4459603 4462465 -1

1 Sequence

Length
1859

1 Sequence Ontology Term

Identifier Name Description
transcript