WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F02E8.6.1 Sequence Name  F02E8.6.1
Length (nt)  4752   Chromosome Location  X: 4472244-4488857
Chromosome . Primary Identifier  X Chromosome Location . Start  4472244
Chromosome Location . End  4488857 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F02E8.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003561 ncr-1 F02E8.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F02E8.6 F02E8.6 4152   X: 4472732-4472835

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F02E8.6.1 4472244 4488857 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon230804   592   X: 4472244-4472835 Caenorhabditis elegans
Exon230805   128   X: 4473282-4473409 Caenorhabditis elegans
Exon230807   158   X: 4473459-4473616 Caenorhabditis elegans
Exon230809   189   X: 4473663-4473851 Caenorhabditis elegans
Exon230811   427   X: 4473904-4474330 Caenorhabditis elegans
Exon230813   482   X: 4474390-4474871 Caenorhabditis elegans
Exon230815   90   X: 4474916-4475005 Caenorhabditis elegans
Exon230818   284   X: 4475281-4475564 Caenorhabditis elegans
Exon230820   707   X: 4475621-4476327 Caenorhabditis elegans
Exon230822   131   X: 4476407-4476537 Caenorhabditis elegans
Exon230824   244   X: 4476591-4476834 Caenorhabditis elegans
Exon230826   278   X: 4477024-4477301 Caenorhabditis elegans
Exon230828   123   X: 4477357-4477479 Caenorhabditis elegans
Exon230831   153   X: 4478110-4478262 Caenorhabditis elegans
Exon230833   282   X: 4478309-4478590 Caenorhabditis elegans
Exon230835   161   X: 4478843-4479003 Caenorhabditis elegans
Exon230837   225   X: 4479866-4480090 Caenorhabditis elegans
Exon230844   98   X: 4488760-4488857 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F02E8.6.1 4472244 4488857 -1

1 Sequence

Length
4752

1 Sequence Ontology Term

Identifier Name Description
transcript