WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05E11.5.1 Sequence Name  C05E11.5.1
Length (nt)  2110   Chromosome Location  X: 4565302-4569620
Chromosome . Primary Identifier  X Chromosome Location . Start  4565302
Chromosome Location . End  4569620 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05E11.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000136 amt-4 C05E11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05E11.5 C05E11.5 1734   X: 4565309-4565432

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05E11.5.1 4565302 4569620 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231025   131   X: 4565302-4565432 Caenorhabditis elegans
Exon231026   90   X: 4565490-4565579 Caenorhabditis elegans
Exon231027   127   X: 4565640-4565766 Caenorhabditis elegans
Exon231028   110   X: 4566765-4566874 Caenorhabditis elegans
Exon231029   95   X: 4566921-4567015 Caenorhabditis elegans
Exon231030   141   X: 4567062-4567202 Caenorhabditis elegans
Exon231031   329   X: 4567469-4567797 Caenorhabditis elegans
Exon231032   166   X: 4568434-4568599 Caenorhabditis elegans
Exon231033   283   X: 4568649-4568931 Caenorhabditis elegans
Exon231034   638   X: 4568983-4569620 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05E11.5.1 4565302 4569620 1

1 Sequence

Length
2110

1 Sequence Ontology Term

Identifier Name Description
transcript