WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08E3.4b.1 Sequence Name  R08E3.4b.1
Length (nt)  2154   Chromosome Location  X: 4805998-4811540
Chromosome . Primary Identifier  X Chromosome Location . Start  4805998
Chromosome Location . End  4811540 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E3.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019960 ztf-16 R08E3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08E3.4b R08E3.4b 1443   X: 4806694-4806876

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08E3.4b.1 4805998 4811540 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231556   879   X: 4805998-4806876 Caenorhabditis elegans
Exon231558   204   X: 4807628-4807831 Caenorhabditis elegans
Exon231560   126   X: 4807880-4808005 Caenorhabditis elegans
Exon231562   180   X: 4808074-4808253 Caenorhabditis elegans
Exon231564   225   X: 4808446-4808670 Caenorhabditis elegans
Exon231567   90   X: 4809567-4809656 Caenorhabditis elegans
Exon231569   69   X: 4809821-4809889 Caenorhabditis elegans
Exon231572   92   X: 4810600-4810691 Caenorhabditis elegans
Exon231574   145   X: 4810795-4810939 Caenorhabditis elegans
Exon231576   56   X: 4811184-4811239 Caenorhabditis elegans
Exon231578   88   X: 4811453-4811540 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08E3.4b.1 4805998 4811540 -1

1 Sequence

Length
2154

1 Sequence Ontology Term

Identifier Name Description
transcript