WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08E3.3b.1 Sequence Name  R08E3.3b.1
Length (nt)  1880   Chromosome Location  X: 4818593-4821715
Chromosome . Primary Identifier  X Chromosome Location . Start  4818593
Chromosome Location . End  4821715 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E3.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019959 R08E3.3 R08E3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08E3.3b R08E3.3b 1551   X: 4818618-4818667

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08E3.3b.1 4818593 4821715 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231585   75   X: 4818593-4818667 Caenorhabditis elegans
Exon231588   63   X: 4818722-4818784 Caenorhabditis elegans
Exon231590   112   X: 4818841-4818952 Caenorhabditis elegans
Exon231592   127   X: 4819003-4819129 Caenorhabditis elegans
Exon231594   113   X: 4819186-4819298 Caenorhabditis elegans
Exon231596   267   X: 4819707-4819973 Caenorhabditis elegans
Exon231598   123   X: 4820021-4820143 Caenorhabditis elegans
Exon231600   114   X: 4820191-4820304 Caenorhabditis elegans
Exon231602   102   X: 4820353-4820454 Caenorhabditis elegans
Exon231603   207   X: 4820521-4820727 Caenorhabditis elegans
Exon231605   132   X: 4821095-4821226 Caenorhabditis elegans
Exon231606   445   X: 4821271-4821715 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08E3.3b.1 4818593 4821715 1

1 Sequence

Length
1880

1 Sequence Ontology Term

Identifier Name Description
transcript