WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08E3.1b.1 Sequence Name  R08E3.1b.1
Length (nt)  5995   Chromosome Location  X: 4822647-4834885
Chromosome . Primary Identifier  X Chromosome Location . Start  4822647
Chromosome Location . End  4834885 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E3.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019957 R08E3.1 R08E3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08E3.1b R08E3.1b 5691   X: 4822662-4822755

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R08E3.1b.1 4822647 4834885 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

46 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231607   109   X: 4822647-4822755 Caenorhabditis elegans
Exon231611   192   X: 4822803-4822994 Caenorhabditis elegans
Exon231614   191   X: 4823317-4823507 Caenorhabditis elegans
Exon231617   156   X: 4823556-4823711 Caenorhabditis elegans
Exon231620   96   X: 4823758-4823853 Caenorhabditis elegans
Exon231623   135   X: 4824250-4824384 Caenorhabditis elegans
Exon231626   133   X: 4824430-4824562 Caenorhabditis elegans
Exon231629   64   X: 4824613-4824676 Caenorhabditis elegans
Exon231632   167   X: 4824723-4824889 Caenorhabditis elegans
Exon231635   188   X: 4824938-4825125 Caenorhabditis elegans
Exon231638   70   X: 4825172-4825241 Caenorhabditis elegans
Exon231641   75   X: 4825810-4825884 Caenorhabditis elegans
Exon231644   91   X: 4825936-4826026 Caenorhabditis elegans
Exon231647   139   X: 4826070-4826208 Caenorhabditis elegans
Exon231650   142   X: 4826261-4826402 Caenorhabditis elegans
Exon231653   92   X: 4826450-4826541 Caenorhabditis elegans
Exon231656   123   X: 4826596-4826718 Caenorhabditis elegans
Exon231659   166   X: 4827202-4827367 Caenorhabditis elegans
Exon231662   137   X: 4827418-4827554 Caenorhabditis elegans
Exon231665   103   X: 4827600-4827702 Caenorhabditis elegans
Exon231668   92   X: 4827756-4827847 Caenorhabditis elegans
Exon231671   111   X: 4827898-4828008 Caenorhabditis elegans
Exon231674   99   X: 4828109-4828207 Caenorhabditis elegans
Exon231677   73   X: 4828250-4828322 Caenorhabditis elegans
Exon231680   66   X: 4828366-4828431 Caenorhabditis elegans
Exon231683   153   X: 4828475-4828627 Caenorhabditis elegans
Exon231686   170   X: 4828699-4828868 Caenorhabditis elegans
Exon231689   204   X: 4829234-4829437 Caenorhabditis elegans
Exon231692   196   X: 4829484-4829679 Caenorhabditis elegans
Exon231695   66   X: 4829732-4829797 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R08E3.1b.1 4822647 4834885 1

1 Sequence

Length
5995

1 Sequence Ontology Term

Identifier Name Description
transcript