WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08E3.1a.1 Sequence Name  R08E3.1a.1
Length (nt)  5926   Chromosome Location  X: 4822661-4834878
Chromosome . Primary Identifier  X Chromosome Location . Start  4822661
Chromosome Location . End  4834878 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08E3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019957 R08E3.1 R08E3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08E3.1a R08E3.1a 5832   X: 4822662-4822755

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R08E3.1a.1 4822661 4834878 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

47 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231609   95   X: 4822661-4822755 Caenorhabditis elegans
Exon231610   192   X: 4822803-4822994 Caenorhabditis elegans
Exon231613   191   X: 4823317-4823507 Caenorhabditis elegans
Exon231616   156   X: 4823556-4823711 Caenorhabditis elegans
Exon231619   96   X: 4823758-4823853 Caenorhabditis elegans
Exon231622   135   X: 4824250-4824384 Caenorhabditis elegans
Exon231625   133   X: 4824430-4824562 Caenorhabditis elegans
Exon231628   64   X: 4824613-4824676 Caenorhabditis elegans
Exon231631   167   X: 4824723-4824889 Caenorhabditis elegans
Exon231634   188   X: 4824938-4825125 Caenorhabditis elegans
Exon231637   70   X: 4825172-4825241 Caenorhabditis elegans
Exon231640   75   X: 4825810-4825884 Caenorhabditis elegans
Exon231643   91   X: 4825936-4826026 Caenorhabditis elegans
Exon231646   139   X: 4826070-4826208 Caenorhabditis elegans
Exon231649   142   X: 4826261-4826402 Caenorhabditis elegans
Exon231652   92   X: 4826450-4826541 Caenorhabditis elegans
Exon231655   123   X: 4826596-4826718 Caenorhabditis elegans
Exon231658   166   X: 4827202-4827367 Caenorhabditis elegans
Exon231661   137   X: 4827418-4827554 Caenorhabditis elegans
Exon231664   103   X: 4827600-4827702 Caenorhabditis elegans
Exon231667   92   X: 4827756-4827847 Caenorhabditis elegans
Exon231670   111   X: 4827898-4828008 Caenorhabditis elegans
Exon231673   99   X: 4828109-4828207 Caenorhabditis elegans
Exon231676   73   X: 4828250-4828322 Caenorhabditis elegans
Exon231679   66   X: 4828366-4828431 Caenorhabditis elegans
Exon231682   153   X: 4828475-4828627 Caenorhabditis elegans
Exon231685   170   X: 4828699-4828868 Caenorhabditis elegans
Exon231688   204   X: 4829234-4829437 Caenorhabditis elegans
Exon231691   196   X: 4829484-4829679 Caenorhabditis elegans
Exon231694   66   X: 4829732-4829797 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R08E3.1a.1 4822661 4834878 1

1 Sequence

Length
5926

1 Sequence Ontology Term

Identifier Name Description
transcript