WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39C12.2b.1 Sequence Name  F39C12.2b.1
Length (nt)  2544   Chromosome Location  X: 4854065-4860043
Chromosome . Primary Identifier  X Chromosome Location . Start  4854065
Chromosome Location . End  4860043 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39C12.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000072 add-1 F39C12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39C12.2b F39C12.2b 2199   X: 4854403-4854474

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F39C12.2b.1 4854065 4860043 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231774   410   X: 4854065-4854474 Caenorhabditis elegans
Exon231778   44   X: 4854830-4854873 Caenorhabditis elegans
Exon231782   90   X: 4854966-4855055 Caenorhabditis elegans
Exon231784   60   X: 4855152-4855211 Caenorhabditis elegans
Exon231788   102   X: 4855320-4855421 Caenorhabditis elegans
Exon231793   259   X: 4855716-4855974 Caenorhabditis elegans
Exon231798   213   X: 4856024-4856236 Caenorhabditis elegans
Exon231803   273   X: 4856781-4857053 Caenorhabditis elegans
Exon231808   86   X: 4857115-4857200 Caenorhabditis elegans
Exon231813   85   X: 4857256-4857340 Caenorhabditis elegans
Exon231818   99   X: 4857645-4857743 Caenorhabditis elegans
Exon231823   60   X: 4857801-4857860 Caenorhabditis elegans
Exon231828   168   X: 4858207-4858374 Caenorhabditis elegans
Exon231833   144   X: 4858423-4858566 Caenorhabditis elegans
Exon231839   143   X: 4858962-4859104 Caenorhabditis elegans
Exon231844   109   X: 4859427-4859535 Caenorhabditis elegans
Exon231849   93   X: 4859609-4859701 Caenorhabditis elegans
Exon231856   106   X: 4859938-4860043 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F39C12.2b.1 4854065 4860043 -1

1 Sequence

Length
2544

1 Sequence Ontology Term

Identifier Name Description
transcript