WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K05B2.5c.1 Sequence Name  K05B2.5c.1
Length (nt)  3641   Chromosome Location  X: 4921337-4929751
Chromosome . Primary Identifier  X Chromosome Location . Start  4921337
Chromosome Location . End  4929751 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K05B2.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003986 mct-4 K05B2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K05B2.5c K05B2.5c 2133   X: 4922895-4923055

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K05B2.5c.1 4921337 4929751 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232031   631   X: 4921337-4921967 Caenorhabditis elegans
Exon232037   1038   X: 4922018-4923055 Caenorhabditis elegans
Exon232045   126   X: 4923105-4923230 Caenorhabditis elegans
Exon232049   162   X: 4923314-4923475 Caenorhabditis elegans
Exon232053   227   X: 4923528-4923754 Caenorhabditis elegans
Exon232057   254   X: 4924199-4924452 Caenorhabditis elegans
Exon232061   293   X: 4924502-4924794 Caenorhabditis elegans
Exon232065   231   X: 4925325-4925555 Caenorhabditis elegans
Exon232069   355   X: 4925604-4925958 Caenorhabditis elegans
Exon232073   143   X: 4926004-4926146 Caenorhabditis elegans
Exon232077   105   X: 4926828-4926932 Caenorhabditis elegans
Exon232079   76   X: 4929676-4929751 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K05B2.5c.1 4921337 4929751 -1

1 Sequence

Length
3641

1 Sequence Ontology Term

Identifier Name Description
transcript