WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC8.4f.1 Sequence Name  ZC8.4f.1
Length (nt)  7864   Chromosome Location  X: 4981240-4993236
Chromosome . Primary Identifier  X Chromosome Location . Start  4981240
Chromosome Location . End  4993236 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC8.4f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022500 lfi-1 ZC8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC8.4f ZC8.4f 7206   X: 4983584-4983896

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZC8.4f.1 4981240 4993236 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232158   256   X: 4981240-4981495 Caenorhabditis elegans
Exon232164   334   X: 4983563-4983896 Caenorhabditis elegans
Exon232172   139   X: 4984067-4984205 Caenorhabditis elegans
Exon232178   127   X: 4984775-4984901 Caenorhabditis elegans
Exon232191   90   X: 4984950-4985039 Caenorhabditis elegans
Exon232200   128   X: 4985082-4985209 Caenorhabditis elegans
Exon232209   364   X: 4985261-4985624 Caenorhabditis elegans
Exon232218   1391   X: 4985677-4987067 Caenorhabditis elegans
Exon232227   1532   X: 4987126-4988657 Caenorhabditis elegans
Exon232236   431   X: 4988714-4989144 Caenorhabditis elegans
Exon232245   184   X: 4989190-4989373 Caenorhabditis elegans
Exon232254   444   X: 4989429-4989872 Caenorhabditis elegans
Exon232263   252   X: 4989919-4990170 Caenorhabditis elegans
Exon232272   164   X: 4990219-4990382 Caenorhabditis elegans
Exon232281   780   X: 4990428-4991207 Caenorhabditis elegans
Exon232290   246   X: 4991255-4991500 Caenorhabditis elegans
Exon232299   239   X: 4991551-4991789 Caenorhabditis elegans
Exon232308   152   X: 4991888-4992039 Caenorhabditis elegans
Exon232313   611   X: 4992626-4993236 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZC8.4f.1 4981240 4993236 1

1 Sequence

Length
7864

1 Sequence Ontology Term

Identifier Name Description
transcript