WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC8.4a.4 Sequence Name  ZC8.4a.4
Length (nt)  7601   Chromosome Location  X: 4983561-4993242
Chromosome . Primary Identifier  X Chromosome Location . Start  4983561
Chromosome Location . End  4993242 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC8.4a.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022500 lfi-1 ZC8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC8.4a ZC8.4a 7191   X: 4983584-4983896

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZC8.4a.4 4983561 4993242 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232160   336   X: 4983561-4983896 Caenorhabditis elegans
Exon232170   139   X: 4984067-4984205 Caenorhabditis elegans
Exon232183   112   X: 4984790-4984901 Caenorhabditis elegans
Exon232188   90   X: 4984950-4985039 Caenorhabditis elegans
Exon232197   128   X: 4985082-4985209 Caenorhabditis elegans
Exon232206   364   X: 4985261-4985624 Caenorhabditis elegans
Exon232215   1391   X: 4985677-4987067 Caenorhabditis elegans
Exon232224   1532   X: 4987126-4988657 Caenorhabditis elegans
Exon232233   431   X: 4988714-4989144 Caenorhabditis elegans
Exon232242   184   X: 4989190-4989373 Caenorhabditis elegans
Exon232251   444   X: 4989429-4989872 Caenorhabditis elegans
Exon232260   252   X: 4989919-4990170 Caenorhabditis elegans
Exon232269   164   X: 4990219-4990382 Caenorhabditis elegans
Exon232278   780   X: 4990428-4991207 Caenorhabditis elegans
Exon232287   246   X: 4991255-4991500 Caenorhabditis elegans
Exon232296   239   X: 4991551-4991789 Caenorhabditis elegans
Exon232305   152   X: 4991888-4992039 Caenorhabditis elegans
Exon232319   617   X: 4992626-4993242 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZC8.4a.4 4983561 4993242 1

1 Sequence

Length
7601

1 Sequence Ontology Term

Identifier Name Description
transcript