WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC8.4d.1 Sequence Name  ZC8.4d.1
Length (nt)  6972   Chromosome Location  X: 4984078-4992855
Chromosome . Primary Identifier  X Chromosome Location . Start  4984078
Chromosome Location . End  4992855 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC8.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022500 lfi-1 ZC8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC8.4d ZC8.4d 6972   X: 4984078-4984205

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZC8.4d.1 4984078 4992855 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232173   128   X: 4984078-4984205 Caenorhabditis elegans
Exon232174   90   X: 4984480-4984569 Caenorhabditis elegans
Exon232176   127   X: 4984775-4984901 Caenorhabditis elegans
Exon232189   90   X: 4984950-4985039 Caenorhabditis elegans
Exon232198   128   X: 4985082-4985209 Caenorhabditis elegans
Exon232207   364   X: 4985261-4985624 Caenorhabditis elegans
Exon232216   1391   X: 4985677-4987067 Caenorhabditis elegans
Exon232225   1532   X: 4987126-4988657 Caenorhabditis elegans
Exon232234   431   X: 4988714-4989144 Caenorhabditis elegans
Exon232243   184   X: 4989190-4989373 Caenorhabditis elegans
Exon232252   444   X: 4989429-4989872 Caenorhabditis elegans
Exon232261   252   X: 4989919-4990170 Caenorhabditis elegans
Exon232270   164   X: 4990219-4990382 Caenorhabditis elegans
Exon232279   780   X: 4990428-4991207 Caenorhabditis elegans
Exon232288   246   X: 4991255-4991500 Caenorhabditis elegans
Exon232297   239   X: 4991551-4991789 Caenorhabditis elegans
Exon232306   152   X: 4991888-4992039 Caenorhabditis elegans
Exon232311   230   X: 4992626-4992855 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZC8.4d.1 4984078 4992855 1

1 Sequence

Length
6972

1 Sequence Ontology Term

Identifier Name Description
transcript