WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42D8.8a.1 Sequence Name  C42D8.8a.1
Length (nt)  2741   Chromosome Location  X: 5112422-5116866
Chromosome . Primary Identifier  X Chromosome Location . Start  5112422
Chromosome Location . End  5116866 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42D8.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000149 apl-1 C42D8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42D8.8a C42D8.8a 2061   X: 5113100-5113420

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42D8.8a.1 5112422 5116866 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232579   999   X: 5112422-5113420 Caenorhabditis elegans
Exon232582   129   X: 5113469-5113597 Caenorhabditis elegans
Exon232583   199   X: 5113650-5113848 Caenorhabditis elegans
Exon232585   183   X: 5113898-5114080 Caenorhabditis elegans
Exon232587   197   X: 5114124-5114320 Caenorhabditis elegans
Exon232589   210   X: 5114374-5114583 Caenorhabditis elegans
Exon232591   134   X: 5114723-5114856 Caenorhabditis elegans
Exon232593   93   X: 5114910-5115002 Caenorhabditis elegans
Exon232595   234   X: 5115139-5115372 Caenorhabditis elegans
Exon232597   127   X: 5115556-5115682 Caenorhabditis elegans
Exon232600   168   X: 5116171-5116338 Caenorhabditis elegans
Exon232603   68   X: 5116799-5116866 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42D8.8a.1 5112422 5116866 -1

1 Sequence

Length
2741

1 Sequence Ontology Term

Identifier Name Description
transcript