WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C31H2.1a.1 Sequence Name  C31H2.1a.1
Length (nt)  2530   Chromosome Location  X: 5134280-5146744
Chromosome . Primary Identifier  X Chromosome Location . Start  5134280
Chromosome Location . End  5146744 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C31H2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016292 tbc-7 C31H2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C31H2.1a C31H2.1a 2040   X: 5134312-5134354

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C31H2.1a.1 5134280 5146744 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232592   75   X: 5134280-5134354 Caenorhabditis elegans
Exon232593   51   X: 5134399-5134449 Caenorhabditis elegans
Exon232595   161   X: 5138991-5139151 Caenorhabditis elegans
Exon232597   98   X: 5139200-5139297 Caenorhabditis elegans
Exon232599   97   X: 5139351-5139447 Caenorhabditis elegans
Exon232604   114   X: 5140926-5141039 Caenorhabditis elegans
Exon232608   148   X: 5142236-5142383 Caenorhabditis elegans
Exon232612   140   X: 5142824-5142963 Caenorhabditis elegans
Exon232616   90   X: 5143422-5143511 Caenorhabditis elegans
Exon232620   141   X: 5143559-5143699 Caenorhabditis elegans
Exon232624   144   X: 5143797-5143940 Caenorhabditis elegans
Exon232628   90   X: 5143987-5144076 Caenorhabditis elegans
Exon232632   93   X: 5144678-5144770 Caenorhabditis elegans
Exon232636   94   X: 5144830-5144923 Caenorhabditis elegans
Exon232640   112   X: 5144973-5145084 Caenorhabditis elegans
Exon232644   120   X: 5145135-5145254 Caenorhabditis elegans
Exon232648   148   X: 5145299-5145446 Caenorhabditis elegans
Exon232655   614   X: 5146131-5146744 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C31H2.1a.1 5134280 5146744 1

1 Sequence

Length
2530

1 Sequence Ontology Term

Identifier Name Description
transcript