WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y34B4A.8d.1 Sequence Name  Y34B4A.8d.1
Length (nt)  2457   Chromosome Location  X: 5271710-5275289
Chromosome . Primary Identifier  X Chromosome Location . Start  5271710
Chromosome Location . End  5275289 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y34B4A.8d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021324 rga-8 Y34B4A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y34B4A.8d Y34B4A.8d 1977   X: 5272183-5272339

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8d.1 5271710 5275289 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232980   630   X: 5271710-5272339 Caenorhabditis elegans
Exon232998   284   X: 5272398-5272681 Caenorhabditis elegans
Exon233006   241   X: 5272947-5273187 Caenorhabditis elegans
Exon233016   147   X: 5273238-5273384 Caenorhabditis elegans
Exon233026   129   X: 5273441-5273569 Caenorhabditis elegans
Exon233036   125   X: 5273619-5273743 Caenorhabditis elegans
Exon233046   203   X: 5273796-5273998 Caenorhabditis elegans
Exon233056   94   X: 5274259-5274352 Caenorhabditis elegans
Exon233066   155   X: 5274414-5274568 Caenorhabditis elegans
Exon233076   247   X: 5274616-5274862 Caenorhabditis elegans
Exon233086   87   X: 5274910-5274996 Caenorhabditis elegans
Exon233095   61   X: 5275066-5275126 Caenorhabditis elegans
Exon233108   54   X: 5275236-5275289 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8d.1 5271710 5275289 -1

1 Sequence

Length
2457

1 Sequence Ontology Term

Identifier Name Description
transcript