WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y34B4A.8a.1 Sequence Name  Y34B4A.8a.1
Length (nt)  2492   Chromosome Location  X: 5271785-5278677
Chromosome . Primary Identifier  X Chromosome Location . Start  5271785
Chromosome Location . End  5278677 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y34B4A.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021324 rga-8 Y34B4A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y34B4A.8a Y34B4A.8a 1815   X: 5272322-5272325

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8a.1 5271785 5278677 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232985   541   X: 5271785-5272325 Caenorhabditis elegans
Exon232990   275   X: 5272398-5272672 Caenorhabditis elegans
Exon233000   241   X: 5272947-5273187 Caenorhabditis elegans
Exon233010   147   X: 5273238-5273384 Caenorhabditis elegans
Exon233020   129   X: 5273441-5273569 Caenorhabditis elegans
Exon233030   125   X: 5273619-5273743 Caenorhabditis elegans
Exon233040   203   X: 5273796-5273998 Caenorhabditis elegans
Exon233050   94   X: 5274259-5274352 Caenorhabditis elegans
Exon233060   155   X: 5274414-5274568 Caenorhabditis elegans
Exon233070   247   X: 5274616-5274862 Caenorhabditis elegans
Exon233080   87   X: 5274910-5274996 Caenorhabditis elegans
Exon233090   61   X: 5275066-5275126 Caenorhabditis elegans
Exon233100   52   X: 5275236-5275287 Caenorhabditis elegans
Exon233117   60   X: 5276516-5276575 Caenorhabditis elegans
Exon233126   75   X: 5278603-5278677 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8a.1 5271785 5278677 -1

1 Sequence

Length
2492

1 Sequence Ontology Term

Identifier Name Description
transcript