WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y34B4A.8f.1 Sequence Name  Y34B4A.8f.1
Length (nt)  2001   Chromosome Location  X: 5272183-5276525
Chromosome . Primary Identifier  X Chromosome Location . Start  5272183
Chromosome Location . End  5276525 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y34B4A.8f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021324 rga-8 Y34B4A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y34B4A.8f Y34B4A.8f 2001   X: 5272183-5272339

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8f.1 5272183 5276525 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232987   157   X: 5272183-5272339 Caenorhabditis elegans
Exon232999   284   X: 5272398-5272681 Caenorhabditis elegans
Exon233008   241   X: 5272947-5273187 Caenorhabditis elegans
Exon233018   147   X: 5273238-5273384 Caenorhabditis elegans
Exon233028   129   X: 5273441-5273569 Caenorhabditis elegans
Exon233038   125   X: 5273619-5273743 Caenorhabditis elegans
Exon233048   203   X: 5273796-5273998 Caenorhabditis elegans
Exon233058   94   X: 5274259-5274352 Caenorhabditis elegans
Exon233068   155   X: 5274414-5274568 Caenorhabditis elegans
Exon233078   247   X: 5274616-5274862 Caenorhabditis elegans
Exon233088   87   X: 5274910-5274996 Caenorhabditis elegans
Exon233098   70   X: 5275066-5275135 Caenorhabditis elegans
Exon233105   52   X: 5275236-5275287 Caenorhabditis elegans
Exon233114   10   X: 5276516-5276525 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8f.1 5272183 5276525 -1

1 Sequence

Length
2001

1 Sequence Ontology Term

Identifier Name Description
transcript