WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y34B4A.8e.1 Sequence Name  Y34B4A.8e.1
Length (nt)  2121   Chromosome Location  X: 5272183-5279774
Chromosome . Primary Identifier  X Chromosome Location . Start  5272183
Chromosome Location . End  5279774 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y34B4A.8e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021324 rga-8 Y34B4A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y34B4A.8e Y34B4A.8e 2121   X: 5272183-5272339

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8e.1 5272183 5279774 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232989   157   X: 5272183-5272339 Caenorhabditis elegans
Exon232995   275   X: 5272398-5272672 Caenorhabditis elegans
Exon233007   241   X: 5272947-5273187 Caenorhabditis elegans
Exon233017   147   X: 5273238-5273384 Caenorhabditis elegans
Exon233027   129   X: 5273441-5273569 Caenorhabditis elegans
Exon233037   125   X: 5273619-5273743 Caenorhabditis elegans
Exon233047   203   X: 5273796-5273998 Caenorhabditis elegans
Exon233057   94   X: 5274259-5274352 Caenorhabditis elegans
Exon233067   155   X: 5274414-5274568 Caenorhabditis elegans
Exon233077   247   X: 5274616-5274862 Caenorhabditis elegans
Exon233087   87   X: 5274910-5274996 Caenorhabditis elegans
Exon233097   70   X: 5275066-5275135 Caenorhabditis elegans
Exon233104   52   X: 5275236-5275287 Caenorhabditis elegans
Exon233119   60   X: 5276516-5276575 Caenorhabditis elegans
Exon233125   69   X: 5278603-5278671 Caenorhabditis elegans
Exon233131   10   X: 5279765-5279774 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y34B4A.8e.1 5272183 5279774 -1

1 Sequence

Length
2121

1 Sequence Ontology Term

Identifier Name Description
transcript