WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C41A3.1b.1 Sequence Name  C41A3.1b.1
Length (nt)  13798   Chromosome Location  X: 5413810-5441961
Chromosome . Primary Identifier  X Chromosome Location . Start  5413810
Chromosome Location . End  5441961 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41A3.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016558 pks-1 C41A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41A3.1b C41A3.1b 13755   X: 5413810-5413895

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C41A3.1b.1 5413810 5441961 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233664   86   X: 5413810-5413895 Caenorhabditis elegans
Exon233666   121   X: 5414257-5414377 Caenorhabditis elegans
Exon233669   215   X: 5414426-5414640 Caenorhabditis elegans
Exon233671   153   X: 5414996-5415148 Caenorhabditis elegans
Exon233673   238   X: 5415193-5415430 Caenorhabditis elegans
Exon233675   149   X: 5415830-5415978 Caenorhabditis elegans
Exon233677   2036   X: 5416022-5418057 Caenorhabditis elegans
Exon233681   294   X: 5418102-5418395 Caenorhabditis elegans
Exon233683   89   X: 5418440-5418528 Caenorhabditis elegans
Exon233685   122   X: 5418579-5418700 Caenorhabditis elegans
Exon233687   342   X: 5419026-5419367 Caenorhabditis elegans
Exon233689   1393   X: 5419414-5420806 Caenorhabditis elegans
Exon233691   574   X: 5421268-5421841 Caenorhabditis elegans
Exon233693   312   X: 5421911-5422222 Caenorhabditis elegans
Exon233695   132   X: 5422965-5423096 Caenorhabditis elegans
Exon233697   1982   X: 5423143-5425124 Caenorhabditis elegans
Exon233699   165   X: 5425574-5425738 Caenorhabditis elegans
Exon233701   142   X: 5425785-5425926 Caenorhabditis elegans
Exon233703   1211   X: 5425976-5427186 Caenorhabditis elegans
Exon233705   216   X: 5427666-5427881 Caenorhabditis elegans
Exon233707   1504   X: 5427937-5429440 Caenorhabditis elegans
Exon233709   202   X: 5429485-5429686 Caenorhabditis elegans
Exon233710   1060   X: 5429734-5430793 Caenorhabditis elegans
Exon233713   69   X: 5440298-5440366 Caenorhabditis elegans
Exon233715   246   X: 5440418-5440663 Caenorhabditis elegans
Exon233717   174   X: 5440708-5440881 Caenorhabditis elegans
Exon233719   186   X: 5441194-5441379 Caenorhabditis elegans
Exon233721   48   X: 5441425-5441472 Caenorhabditis elegans
Exon233723   110   X: 5441521-5441630 Caenorhabditis elegans
Exon233725   85   X: 5441678-5441762 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C41A3.1b.1 5413810 5441961 1

1 Sequence

Length
13798

1 Sequence Ontology Term

Identifier Name Description
transcript