WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C41A3.1b.1 Sequence Name  C41A3.1b.1
Length (nt)  13798   Chromosome Location  X: 5413810-5441961
Chromosome . Primary Identifier  X Chromosome Location . Start  5413810
Chromosome Location . End  5441961 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41A3.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016558 pks-1 C41A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41A3.1b C41A3.1b 13755   X: 5413810-5413895

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C41A3.1b.1 5413810 5441961 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233644   86   X: 5413810-5413895 Caenorhabditis elegans
Exon233646   121   X: 5414257-5414377 Caenorhabditis elegans
Exon233649   215   X: 5414426-5414640 Caenorhabditis elegans
Exon233651   153   X: 5414996-5415148 Caenorhabditis elegans
Exon233653   238   X: 5415193-5415430 Caenorhabditis elegans
Exon233655   149   X: 5415830-5415978 Caenorhabditis elegans
Exon233657   2036   X: 5416022-5418057 Caenorhabditis elegans
Exon233661   294   X: 5418102-5418395 Caenorhabditis elegans
Exon233663   89   X: 5418440-5418528 Caenorhabditis elegans
Exon233665   122   X: 5418579-5418700 Caenorhabditis elegans
Exon233667   342   X: 5419026-5419367 Caenorhabditis elegans
Exon233669   1393   X: 5419414-5420806 Caenorhabditis elegans
Exon233671   574   X: 5421268-5421841 Caenorhabditis elegans
Exon233673   312   X: 5421911-5422222 Caenorhabditis elegans
Exon233675   132   X: 5422965-5423096 Caenorhabditis elegans
Exon233677   1982   X: 5423143-5425124 Caenorhabditis elegans
Exon233679   165   X: 5425574-5425738 Caenorhabditis elegans
Exon233681   142   X: 5425785-5425926 Caenorhabditis elegans
Exon233683   1211   X: 5425976-5427186 Caenorhabditis elegans
Exon233685   216   X: 5427666-5427881 Caenorhabditis elegans
Exon233687   1504   X: 5427937-5429440 Caenorhabditis elegans
Exon233689   202   X: 5429485-5429686 Caenorhabditis elegans
Exon233690   1060   X: 5429734-5430793 Caenorhabditis elegans
Exon233693   69   X: 5440298-5440366 Caenorhabditis elegans
Exon233695   246   X: 5440418-5440663 Caenorhabditis elegans
Exon233697   174   X: 5440708-5440881 Caenorhabditis elegans
Exon233699   186   X: 5441194-5441379 Caenorhabditis elegans
Exon233701   48   X: 5441425-5441472 Caenorhabditis elegans
Exon233703   110   X: 5441521-5441630 Caenorhabditis elegans
Exon233705   85   X: 5441678-5441762 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C41A3.1b.1 5413810 5441961 1

1 Sequence

Length
13798

1 Sequence Ontology Term

Identifier Name Description
transcript