WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C25F6.4.1 Sequence Name  C25F6.4.1
Length (nt)  3049   Chromosome Location  X: 5461230-5466785
Chromosome . Primary Identifier  X Chromosome Location . Start  5461230
Chromosome Location . End  5466785 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C25F6.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016104 ddr-1 C25F6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C25F6.4 C25F6.4 2301   X: 5461256-5461319

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C25F6.4.1 5461230 5466785 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233744   90   X: 5461230-5461319 Caenorhabditis elegans
Exon233745   185   X: 5461384-5461568 Caenorhabditis elegans
Exon233746   153   X: 5461616-5461768 Caenorhabditis elegans
Exon233747   148   X: 5462277-5462424 Caenorhabditis elegans
Exon233748   109   X: 5462476-5462584 Caenorhabditis elegans
Exon233749   101   X: 5462743-5462843 Caenorhabditis elegans
Exon233750   106   X: 5462888-5462993 Caenorhabditis elegans
Exon233751   78   X: 5463293-5463370 Caenorhabditis elegans
Exon233752   107   X: 5463420-5463526 Caenorhabditis elegans
Exon233753   167   X: 5463574-5463740 Caenorhabditis elegans
Exon233754   314   X: 5464098-5464411 Caenorhabditis elegans
Exon233755   300   X: 5464461-5464760 Caenorhabditis elegans
Exon233756   196   X: 5465486-5465681 Caenorhabditis elegans
Exon233757   150   X: 5465737-5465886 Caenorhabditis elegans
Exon233758   845   X: 5465941-5466785 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C25F6.4.1 5461230 5466785 1

1 Sequence

Length
3049

1 Sequence Ontology Term

Identifier Name Description
transcript