WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3a.1 Sequence Name  C54G7.3a.1
Length (nt)  4937   Chromosome Location  X: 5525123-5538514
Chromosome . Primary Identifier  X Chromosome Location . Start  5525123
Chromosome Location . End  5538514 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3a C54G7.3a 4665   X: 5525342-5525530

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3a.1 5525123 5538514 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233895   408   X: 5525123-5525530 Caenorhabditis elegans
Exon233904   228   X: 5525595-5525822 Caenorhabditis elegans
Exon233912   264   X: 5525965-5526228 Caenorhabditis elegans
Exon233920   154   X: 5526275-5526428 Caenorhabditis elegans
Exon233928   117   X: 5526476-5526592 Caenorhabditis elegans
Exon233936   127   X: 5526872-5526998 Caenorhabditis elegans
Exon233944   138   X: 5527046-5527183 Caenorhabditis elegans
Exon233952   135   X: 5527234-5527368 Caenorhabditis elegans
Exon233960   147   X: 5527425-5527571 Caenorhabditis elegans
Exon233968   267   X: 5527615-5527881 Caenorhabditis elegans
Exon233976   82   X: 5527932-5528013 Caenorhabditis elegans
Exon233984   155   X: 5528059-5528213 Caenorhabditis elegans
Exon233993   111   X: 5529270-5529380 Caenorhabditis elegans
Exon234002   308   X: 5529438-5529745 Caenorhabditis elegans
Exon234011   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234020   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234034   150   X: 5530629-5530778 Caenorhabditis elegans
Exon234038   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234047   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234056   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234066   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234075   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234084   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234098   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234112   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234121   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234130   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234139   112   X: 5538257-5538368 Caenorhabditis elegans
Exon234155   99   X: 5538416-5538514 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3a.1 5525123 5538514 -1

1 Sequence

Length
4937

1 Sequence Ontology Term

Identifier Name Description
transcript