WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3a.1 Sequence Name  C54G7.3a.1
Length (nt)  4937   Chromosome Location  X: 5525123-5538514
Chromosome . Primary Identifier  X Chromosome Location . Start  5525123
Chromosome Location . End  5538514 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3a C54G7.3a 4665   X: 5525342-5525530

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3a.1 5525123 5538514 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233875   408   X: 5525123-5525530 Caenorhabditis elegans
Exon233884   228   X: 5525595-5525822 Caenorhabditis elegans
Exon233892   264   X: 5525965-5526228 Caenorhabditis elegans
Exon233900   154   X: 5526275-5526428 Caenorhabditis elegans
Exon233908   117   X: 5526476-5526592 Caenorhabditis elegans
Exon233916   127   X: 5526872-5526998 Caenorhabditis elegans
Exon233924   138   X: 5527046-5527183 Caenorhabditis elegans
Exon233932   135   X: 5527234-5527368 Caenorhabditis elegans
Exon233940   147   X: 5527425-5527571 Caenorhabditis elegans
Exon233948   267   X: 5527615-5527881 Caenorhabditis elegans
Exon233956   82   X: 5527932-5528013 Caenorhabditis elegans
Exon233964   155   X: 5528059-5528213 Caenorhabditis elegans
Exon233973   111   X: 5529270-5529380 Caenorhabditis elegans
Exon233982   308   X: 5529438-5529745 Caenorhabditis elegans
Exon233991   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234000   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234014   150   X: 5530629-5530778 Caenorhabditis elegans
Exon234018   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234027   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234036   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234046   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234055   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234064   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234078   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234092   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234101   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234110   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234119   112   X: 5538257-5538368 Caenorhabditis elegans
Exon234135   99   X: 5538416-5538514 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3a.1 5525123 5538514 -1

1 Sequence

Length
4937

1 Sequence Ontology Term

Identifier Name Description
transcript