WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3d.1 Sequence Name  C54G7.3d.1
Length (nt)  5112   Chromosome Location  X: 5525342-5538461
Chromosome . Primary Identifier  X Chromosome Location . Start  5525342
Chromosome Location . End  5538461 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3d C54G7.3d 5112   X: 5525342-5525530

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3d.1 5525342 5538461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233878   189   X: 5525342-5525530 Caenorhabditis elegans
Exon233886   228   X: 5525595-5525822 Caenorhabditis elegans
Exon233894   264   X: 5525965-5526228 Caenorhabditis elegans
Exon233902   154   X: 5526275-5526428 Caenorhabditis elegans
Exon233910   117   X: 5526476-5526592 Caenorhabditis elegans
Exon233918   127   X: 5526872-5526998 Caenorhabditis elegans
Exon233926   138   X: 5527046-5527183 Caenorhabditis elegans
Exon233934   135   X: 5527234-5527368 Caenorhabditis elegans
Exon233942   147   X: 5527425-5527571 Caenorhabditis elegans
Exon233950   267   X: 5527615-5527881 Caenorhabditis elegans
Exon233958   82   X: 5527932-5528013 Caenorhabditis elegans
Exon233966   155   X: 5528059-5528213 Caenorhabditis elegans
Exon233976   111   X: 5529270-5529380 Caenorhabditis elegans
Exon233985   308   X: 5529438-5529745 Caenorhabditis elegans
Exon233994   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234003   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234011   453   X: 5530326-5530778 Caenorhabditis elegans
Exon234021   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234030   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234039   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234049   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234058   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234067   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234075   144   X: 5536273-5536416 Caenorhabditis elegans
Exon234081   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234095   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234104   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234113   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234122   112   X: 5538257-5538368 Caenorhabditis elegans
Exon234129   46   X: 5538416-5538461 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3d.1 5525342 5538461 -1

1 Sequence

Length
5112

1 Sequence Ontology Term

Identifier Name Description
transcript