WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3f.1 Sequence Name  C54G7.3f.1
Length (nt)  4968   Chromosome Location  X: 5525342-5538461
Chromosome . Primary Identifier  X Chromosome Location . Start  5525342
Chromosome Location . End  5538461 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3f C54G7.3f 4968   X: 5525342-5525530

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3f.1 5525342 5538461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233900   189   X: 5525342-5525530 Caenorhabditis elegans
Exon233908   228   X: 5525595-5525822 Caenorhabditis elegans
Exon233916   264   X: 5525965-5526228 Caenorhabditis elegans
Exon233924   154   X: 5526275-5526428 Caenorhabditis elegans
Exon233932   117   X: 5526476-5526592 Caenorhabditis elegans
Exon233940   127   X: 5526872-5526998 Caenorhabditis elegans
Exon233948   138   X: 5527046-5527183 Caenorhabditis elegans
Exon233956   135   X: 5527234-5527368 Caenorhabditis elegans
Exon233964   147   X: 5527425-5527571 Caenorhabditis elegans
Exon233972   267   X: 5527615-5527881 Caenorhabditis elegans
Exon233980   82   X: 5527932-5528013 Caenorhabditis elegans
Exon233988   155   X: 5528059-5528213 Caenorhabditis elegans
Exon233998   111   X: 5529270-5529380 Caenorhabditis elegans
Exon234007   308   X: 5529438-5529745 Caenorhabditis elegans
Exon234016   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234025   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234033   453   X: 5530326-5530778 Caenorhabditis elegans
Exon234043   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234052   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234061   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234071   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234080   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234089   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234103   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234117   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234126   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234135   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234144   112   X: 5538257-5538368 Caenorhabditis elegans
Exon234151   46   X: 5538416-5538461 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3f.1 5525342 5538461 -1

1 Sequence

Length
4968

1 Sequence Ontology Term

Identifier Name Description
transcript