WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3f.1 Sequence Name  C54G7.3f.1
Length (nt)  4968   Chromosome Location  X: 5525342-5538461
Chromosome . Primary Identifier  X Chromosome Location . Start  5525342
Chromosome Location . End  5538461 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3f C54G7.3f 4968   X: 5525342-5525530

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3f.1 5525342 5538461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233880   189   X: 5525342-5525530 Caenorhabditis elegans
Exon233888   228   X: 5525595-5525822 Caenorhabditis elegans
Exon233896   264   X: 5525965-5526228 Caenorhabditis elegans
Exon233904   154   X: 5526275-5526428 Caenorhabditis elegans
Exon233912   117   X: 5526476-5526592 Caenorhabditis elegans
Exon233920   127   X: 5526872-5526998 Caenorhabditis elegans
Exon233928   138   X: 5527046-5527183 Caenorhabditis elegans
Exon233936   135   X: 5527234-5527368 Caenorhabditis elegans
Exon233944   147   X: 5527425-5527571 Caenorhabditis elegans
Exon233952   267   X: 5527615-5527881 Caenorhabditis elegans
Exon233960   82   X: 5527932-5528013 Caenorhabditis elegans
Exon233968   155   X: 5528059-5528213 Caenorhabditis elegans
Exon233978   111   X: 5529270-5529380 Caenorhabditis elegans
Exon233987   308   X: 5529438-5529745 Caenorhabditis elegans
Exon233996   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234005   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234013   453   X: 5530326-5530778 Caenorhabditis elegans
Exon234023   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234032   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234041   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234051   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234060   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234069   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234083   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234097   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234106   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234115   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234124   112   X: 5538257-5538368 Caenorhabditis elegans
Exon234131   46   X: 5538416-5538461 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3f.1 5525342 5538461 -1

1 Sequence

Length
4968

1 Sequence Ontology Term

Identifier Name Description
transcript