WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3h.1 Sequence Name  C54G7.3h.1
Length (nt)  4809   Chromosome Location  X: 5525342-5538461
Chromosome . Primary Identifier  X Chromosome Location . Start  5525342
Chromosome Location . End  5538461 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3h C54G7.3h 4809   X: 5525342-5525530

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3h.1 5525342 5538461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233882   189   X: 5525342-5525530 Caenorhabditis elegans
Exon233890   228   X: 5525595-5525822 Caenorhabditis elegans
Exon233898   264   X: 5525965-5526228 Caenorhabditis elegans
Exon233906   154   X: 5526275-5526428 Caenorhabditis elegans
Exon233914   117   X: 5526476-5526592 Caenorhabditis elegans
Exon233922   127   X: 5526872-5526998 Caenorhabditis elegans
Exon233930   138   X: 5527046-5527183 Caenorhabditis elegans
Exon233938   135   X: 5527234-5527368 Caenorhabditis elegans
Exon233946   147   X: 5527425-5527571 Caenorhabditis elegans
Exon233954   267   X: 5527615-5527881 Caenorhabditis elegans
Exon233962   82   X: 5527932-5528013 Caenorhabditis elegans
Exon233970   155   X: 5528059-5528213 Caenorhabditis elegans
Exon233980   111   X: 5529270-5529380 Caenorhabditis elegans
Exon233989   308   X: 5529438-5529745 Caenorhabditis elegans
Exon233998   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234007   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234016   150   X: 5530629-5530778 Caenorhabditis elegans
Exon234025   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234034   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234043   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234053   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234062   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234071   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234077   144   X: 5536273-5536416 Caenorhabditis elegans
Exon234085   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234099   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234108   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234117   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234126   112   X: 5538257-5538368 Caenorhabditis elegans
Exon234133   46   X: 5538416-5538461 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3h.1 5525342 5538461 -1

1 Sequence

Length
4809

1 Sequence Ontology Term

Identifier Name Description
transcript