WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G7.3b.1 Sequence Name  C54G7.3b.1
Length (nt)  4202   Chromosome Location  X: 5528212-5538516
Chromosome . Primary Identifier  X Chromosome Location . Start  5528212
Chromosome Location . End  5538516 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G7.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002983 lgx-1 C54G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G7.3b C54G7.3b 3696   X: 5528663-5529096

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3b.1 5528212 5538516 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233972   885   X: 5528212-5529096 Caenorhabditis elegans
Exon233974   111   X: 5529270-5529380 Caenorhabditis elegans
Exon233983   308   X: 5529438-5529745 Caenorhabditis elegans
Exon233992   122   X: 5529794-5529915 Caenorhabditis elegans
Exon234001   89   X: 5529961-5530049 Caenorhabditis elegans
Exon234009   453   X: 5530326-5530778 Caenorhabditis elegans
Exon234019   145   X: 5530828-5530972 Caenorhabditis elegans
Exon234028   86   X: 5531025-5531110 Caenorhabditis elegans
Exon234037   81   X: 5531161-5531241 Caenorhabditis elegans
Exon234047   132   X: 5535225-5535356 Caenorhabditis elegans
Exon234056   310   X: 5535410-5535719 Caenorhabditis elegans
Exon234065   107   X: 5535765-5535871 Caenorhabditis elegans
Exon234073   144   X: 5536273-5536416 Caenorhabditis elegans
Exon234079   138   X: 5536499-5536636 Caenorhabditis elegans
Exon234087   153   X: 5536780-5536932 Caenorhabditis elegans
Exon234093   403   X: 5537025-5537427 Caenorhabditis elegans
Exon234102   206   X: 5537471-5537676 Caenorhabditis elegans
Exon234111   116   X: 5537727-5537842 Caenorhabditis elegans
Exon234120   112   X: 5538257-5538368 Caenorhabditis elegans
Exon234136   101   X: 5538416-5538516 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54G7.3b.1 5528212 5538516 -1

1 Sequence

Length
4202

1 Sequence Ontology Term

Identifier Name Description
transcript