WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W01C8.4.1 Sequence Name  W01C8.4.1
Length (nt)  1936   Chromosome Location  X: 5680330-5686158
Chromosome . Primary Identifier  X Chromosome Location . Start  5680330
Chromosome Location . End  5686158 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W01C8.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020920 set-20 W01C8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W01C8.4 W01C8.4 1578   X: 5680561-5680689

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W01C8.4.1 5680330 5686158 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon234641   360   X: 5680330-5680689 Caenorhabditis elegans
Exon234643   196   X: 5680953-5681148 Caenorhabditis elegans
Exon234645   98   X: 5681209-5681306 Caenorhabditis elegans
Exon234647   194   X: 5681353-5681546 Caenorhabditis elegans
Exon234649   125   X: 5682108-5682232 Caenorhabditis elegans
Exon234651   41   X: 5682376-5682416 Caenorhabditis elegans
Exon234654   81   X: 5682464-5682544 Caenorhabditis elegans
Exon234656   157   X: 5682594-5682750 Caenorhabditis elegans
Exon234658   75   X: 5682798-5682872 Caenorhabditis elegans
Exon234660   151   X: 5683084-5683234 Caenorhabditis elegans
Exon234662   55   X: 5683282-5683336 Caenorhabditis elegans
Exon234664   126   X: 5684073-5684198 Caenorhabditis elegans
Exon234666   96   X: 5684299-5684394 Caenorhabditis elegans
Exon234668   61   X: 5684561-5684621 Caenorhabditis elegans
Exon234672   120   X: 5686039-5686158 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W01C8.4.1 5680330 5686158 -1

1 Sequence

Length
1936

1 Sequence Ontology Term

Identifier Name Description
transcript