WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C41G11.3a.1 Sequence Name  C41G11.3a.1
Length (nt)  2371   Chromosome Location  X: 5720741-5728656
Chromosome . Primary Identifier  X Chromosome Location . Start  5720741
Chromosome Location . End  5728656 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41G11.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004349 rgs-6 C41G11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41G11.3a C41G11.3a 2205   X: 5720888-5721403

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C41G11.3a.1 5720741 5728656 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon234749   663   X: 5720741-5721403 Caenorhabditis elegans
Exon234751   168   X: 5722261-5722428 Caenorhabditis elegans
Exon234755   102   X: 5722477-5722578 Caenorhabditis elegans
Exon234759   200   X: 5722679-5722878 Caenorhabditis elegans
Exon234763   194   X: 5723496-5723689 Caenorhabditis elegans
Exon234767   227   X: 5724080-5724306 Caenorhabditis elegans
Exon234771   161   X: 5726126-5726286 Caenorhabditis elegans
Exon234776   84   X: 5726461-5726544 Caenorhabditis elegans
Exon234780   130   X: 5726753-5726882 Caenorhabditis elegans
Exon234784   156   X: 5726929-5727084 Caenorhabditis elegans
Exon234788   132   X: 5727128-5727259 Caenorhabditis elegans
Exon234792   154   X: 5728503-5728656 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C41G11.3a.1 5720741 5728656 -1

1 Sequence

Length
2371

1 Sequence Ontology Term

Identifier Name Description
transcript