WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46G11.1b.1 Sequence Name  F46G11.1b.1
Length (nt)  2073   Chromosome Location  X: 5791215-5797343
Chromosome . Primary Identifier  X Chromosome Location . Start  5791215
Chromosome Location . End  5797343 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46G11.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018514 twnk-1 F46G11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46G11.1b F46G11.1b 1707   X: 5791744-5791755

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46G11.1b.1 5791215 5797343 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon234949   39   X: 5791215-5791253 Caenorhabditis elegans
Exon234952   53   X: 5791703-5791755 Caenorhabditis elegans
Exon234955   98   X: 5791799-5791896 Caenorhabditis elegans
Exon234963   70   X: 5793996-5794065 Caenorhabditis elegans
Exon234967   281   X: 5794111-5794391 Caenorhabditis elegans
Exon234971   276   X: 5794438-5794713 Caenorhabditis elegans
Exon234975   73   X: 5794850-5794922 Caenorhabditis elegans
Exon234979   111   X: 5794971-5795081 Caenorhabditis elegans
Exon234983   135   X: 5795132-5795266 Caenorhabditis elegans
Exon234986   74   X: 5795323-5795396 Caenorhabditis elegans
Exon234994   133   X: 5795929-5796061 Caenorhabditis elegans
Exon234998   126   X: 5796107-5796232 Caenorhabditis elegans
Exon235002   213   X: 5796694-5796906 Caenorhabditis elegans
Exon235008   391   X: 5796953-5797343 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46G11.1b.1 5791215 5797343 1

1 Sequence

Length
2073

1 Sequence Ontology Term

Identifier Name Description
transcript