WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46G11.1a.1 Sequence Name  F46G11.1a.1
Length (nt)  2104   Chromosome Location  X: 5791703-5797332
Chromosome . Primary Identifier  X Chromosome Location . Start  5791703
Chromosome Location . End  5797332 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46G11.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018514 twnk-1 F46G11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46G11.1a F46G11.1a 1788   X: 5791744-5791755

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46G11.1a.1 5791703 5797332 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon234953   53   X: 5791703-5791755 Caenorhabditis elegans
Exon234954   98   X: 5791799-5791896 Caenorhabditis elegans
Exon234962   70   X: 5793996-5794065 Caenorhabditis elegans
Exon234966   281   X: 5794111-5794391 Caenorhabditis elegans
Exon234970   276   X: 5794438-5794713 Caenorhabditis elegans
Exon234974   73   X: 5794850-5794922 Caenorhabditis elegans
Exon234978   111   X: 5794971-5795081 Caenorhabditis elegans
Exon234982   135   X: 5795132-5795266 Caenorhabditis elegans
Exon234989   101   X: 5795323-5795423 Caenorhabditis elegans
Exon234990   54   X: 5795487-5795540 Caenorhabditis elegans
Exon234993   133   X: 5795929-5796061 Caenorhabditis elegans
Exon234997   126   X: 5796107-5796232 Caenorhabditis elegans
Exon235001   213   X: 5796694-5796906 Caenorhabditis elegans
Exon235006   380   X: 5796953-5797332 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46G11.1a.1 5791703 5797332 1

1 Sequence

Length
2104

1 Sequence Ontology Term

Identifier Name Description
transcript