WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46G11.1d.1 Sequence Name  F46G11.1d.1
Length (nt)  2219   Chromosome Location  X: 5793156-5797340
Chromosome . Primary Identifier  X Chromosome Location . Start  5793156
Chromosome Location . End  5797340 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46G11.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018514 twnk-1 F46G11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46G11.1d F46G11.1d 1761   X: 5793331-5793494

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46G11.1d.1 5793156 5797340 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon234958   339   X: 5793156-5793494 Caenorhabditis elegans
Exon234965   70   X: 5793996-5794065 Caenorhabditis elegans
Exon234969   281   X: 5794111-5794391 Caenorhabditis elegans
Exon234973   276   X: 5794438-5794713 Caenorhabditis elegans
Exon234977   73   X: 5794850-5794922 Caenorhabditis elegans
Exon234981   111   X: 5794971-5795081 Caenorhabditis elegans
Exon234985   135   X: 5795132-5795266 Caenorhabditis elegans
Exon234988   74   X: 5795323-5795396 Caenorhabditis elegans
Exon234996   133   X: 5795929-5796061 Caenorhabditis elegans
Exon235000   126   X: 5796107-5796232 Caenorhabditis elegans
Exon235004   213   X: 5796694-5796906 Caenorhabditis elegans
Exon235007   388   X: 5796953-5797340 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46G11.1d.1 5793156 5797340 1

1 Sequence

Length
2219

1 Sequence Ontology Term

Identifier Name Description
transcript