WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E10.5b.1 Sequence Name  F49E10.5b.1
Length (nt)  2470   Chromosome Location  X: 5867825-5873346
Chromosome . Primary Identifier  X Chromosome Location . Start  5867825
Chromosome Location . End  5873346 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E10.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006424 ctbp-1 F49E10.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E10.5b F49E10.5b 1821   X: 5867874-5867928

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E10.5b.1 5867825 5873346 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235138   104   X: 5867825-5867928 Caenorhabditis elegans
Exon235142   78   X: 5869363-5869440 Caenorhabditis elegans
Exon235144   152   X: 5869500-5869651 Caenorhabditis elegans
Exon235147   145   X: 5870518-5870662 Caenorhabditis elegans
Exon235149   125   X: 5870709-5870833 Caenorhabditis elegans
Exon235151   191   X: 5870880-5871070 Caenorhabditis elegans
Exon235153   251   X: 5871125-5871375 Caenorhabditis elegans
Exon235155   98   X: 5871426-5871523 Caenorhabditis elegans
Exon235157   127   X: 5871966-5872092 Caenorhabditis elegans
Exon235158   1199   X: 5872148-5873346 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E10.5b.1 5867825 5873346 1

1 Sequence

Length
2470

1 Sequence Ontology Term

Identifier Name Description
transcript