WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46F4.2a.2 Sequence Name  C46F4.2a.2
Length (nt)  2871   Chromosome Location  X: 5937506-5944510
Chromosome . Primary Identifier  X Chromosome Location . Start  5937506
Chromosome Location . End  5944510 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46F4.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016716 acs-17 C46F4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46F4.2a C46F4.2a 2157   X: 5937960-5938111

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46F4.2a.2 5937506 5944510 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235266   606   X: 5937506-5938111 Caenorhabditis elegans
Exon235271   273   X: 5938402-5938674 Caenorhabditis elegans
Exon235275   770   X: 5938735-5939504 Caenorhabditis elegans
Exon235279   148   X: 5939707-5939854 Caenorhabditis elegans
Exon235285   249   X: 5940105-5940353 Caenorhabditis elegans
Exon235287   85   X: 5940413-5940497 Caenorhabditis elegans
Exon235291   181   X: 5940546-5940726 Caenorhabditis elegans
Exon235295   122   X: 5941627-5941748 Caenorhabditis elegans
Exon235299   93   X: 5941802-5941894 Caenorhabditis elegans
Exon235303   92   X: 5941956-5942047 Caenorhabditis elegans
Exon235307   252   X: 5944259-5944510 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46F4.2a.2 5937506 5944510 -1

1 Sequence

Length
2871

1 Sequence Ontology Term

Identifier Name Description
transcript