WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46F4.2a.1 Sequence Name  C46F4.2a.1
Length (nt)  2556   Chromosome Location  X: 5937569-5942047
Chromosome . Primary Identifier  X Chromosome Location . Start  5937569
Chromosome Location . End  5942047 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46F4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016716 acs-17 C46F4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46F4.2a C46F4.2a 2157   X: 5937960-5938111

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46F4.2a.1 5937569 5942047 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235269   543   X: 5937569-5938111 Caenorhabditis elegans
Exon235270   273   X: 5938402-5938674 Caenorhabditis elegans
Exon235274   770   X: 5938735-5939504 Caenorhabditis elegans
Exon235278   148   X: 5939707-5939854 Caenorhabditis elegans
Exon235284   249   X: 5940105-5940353 Caenorhabditis elegans
Exon235286   85   X: 5940413-5940497 Caenorhabditis elegans
Exon235290   181   X: 5940546-5940726 Caenorhabditis elegans
Exon235294   122   X: 5941627-5941748 Caenorhabditis elegans
Exon235298   93   X: 5941802-5941894 Caenorhabditis elegans
Exon235302   92   X: 5941956-5942047 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46F4.2a.1 5937569 5942047 -1

1 Sequence

Length
2556

1 Sequence Ontology Term

Identifier Name Description
transcript